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    SUPT16H suppressor of Ty 16 homolog (S. cerevisiae) [ Homo sapiens ]

    Gene ID: 11198, updated on 19-May-2012

    Summary

    Official Symbol
    SUPT16Hprovided by HGNC
    Official Full Name
    suppressor of Ty 16 homolog (S. cerevisiae)provided by HGNC
    Primary source
    HGNC:11465
    See related
    Ensembl:ENSG00000092201; HPRD:16088; MIM:605012; Vega:OTTHUMG00000029685
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CDC68; FACTP140; SPT16/CDC68; FLJ10857; FLJ14010; FLJ34357
    Summary
    Transcription of protein-coding genes can be reconstituted on naked DNA with only the general transcription factors and RNA polymerase II. However, this minimal system cannot transcribe DNA packaged into chromatin, indicating that accessory factors may facilitate access to DNA. One such factor, FACT (facilitates chromatin transcription), interacts specifically with histones H2A/H2B to effect nucleosome disassembly and transcription elongation. FACT is composed of an 80 kDa subunit and a 140 kDa subunit; this gene encodes the 140 kDa subunit. [provided by RefSeq, Feb 2009]

    Genomic context

    Location :
    14q11.2
    Sequence :
    Chromosome: 14; NC_000014.8 (21819631..21852425, complement)
    See SUPT16H in Epigenomics, MapViewer

    Chromosome 14 - NC_000014.8Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein C (C1/C2) Neighboring gene uncharacterized LOC100652761 Neighboring gene retinitis pigmentosa GTPase regulator interacting protein 1 Neighboring gene mitochondrial ribosomal protein S17 pseudogene 6 Neighboring gene chromodomain helicase DNA binding protein 8 Neighboring gene small nucleolar RNA, C/D box 9 Neighboring gene small nucleolar RNA, C/D box 8

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    NP_009123.1 NP_002098.1 H3F3A    BIND  PubMed H3F3A (Histone 3) interacts with SUPT16H (FACT). 
    NP_009123.1 NC_000003.9 HES1    BIND  PubMed HES1 promoter interacts with FACT. 
    Q9Y5B9 P29084 GTF2E2    HPRD  PubMed  
    Q9Y5B9 P84243 H3F3B    HPRD  PubMed  
    Q9Y5B9 P25205 MCM3    HPRD  PubMed  
    Q9Y5B9 P33991 MCM4    HPRD  PubMed  
    Q9Y5B9 Q8TD19 NEK9    HPRD  PubMed  
    Q9Y5B9 Q8WXA9 SREK1    HPRD  PubMed  
    BioGRID:116367 BioGRID:122599 BRCC3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:107459 CDK9    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:116367 BioGRID:114929 CHD1L    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:109268 H2AFX    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex 
    BioGRID:116367 BioGRID:109272 H3F3A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:109318 HDGF    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:113945 HIST2H2BE    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:116367 BioGRID:110341 MCM4    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:116367 BioGRID:121642 MKL1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:116367 BioGRID:128982 MMS22L    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:120081 PAF1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:116367 BioGRID:106652 PARP1    BioGRID  PubMed Biochemical Activity 
    BioGRID:116367 BioGRID:117396 POLR1A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:122173 POLR1E    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:111549 PRKAA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:121244 SMARCAD1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:112540 SOX2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:126754 SREK1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:112627 SSRP1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-purification 
    BioGRID:116367 BioGRID:112497 SUMO2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:116367 SUPT16H    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:116367 BioGRID:112749 TAL1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:116367 BioGRID:110863 TONSL    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:119625 TRIM33    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:116367 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:116367 BioGRID:1205541 tat    BioGRID  PubMed Reconstituted Complex 

    General gene information

    Markers

    Homology

    • Homologs of the SUPT16H gene: The SUPT16H gene is conserved in chimpanzee, dog, cow, mouse, rat, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, , S.pombe, , N.crassa, A.thaliana, and rice.
    • Map Viewer (Mouse, Rat)

    Pathways from BioSystems

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    DNA repair IEA
    Inferred from Electronic Annotation
    more info
     
    DNA replication IEA
    Inferred from Electronic Annotation
    more info
     
    cellular process IEA
    Inferred from Electronic Annotation
    more info
     
    gene expression TAS
    Traceable Author Statement
    more info
     
    nucleosome disassembly TAS
    Traceable Author Statement
    more info
    PubMed 
    positive regulation of transcription elongation, DNA-dependent TAS
    Traceable Author Statement
    more info
    PubMed 
    positive regulation of viral transcription TAS
    Traceable Author Statement
    more info
     
    regulation of transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
     
    transcription elongation from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    transcription from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    viral reproduction TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    FACT complex subunit SPT16
    Names
    FACT complex subunit SPT16
    hSPT16
    FACT 140 kDa subunit
    facilitates chromatin remodeling 140 kDa subunit
    facilitates chromatin transcription complex subunit SPT16
    chromatin-specific transcription elongation factor 140 kDa subunit

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009932.1 RefSeqGene

      Range
      5001..37795
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_007192.3NP_009123.1  FACT complex subunit SPT16

      Status: REVIEWED

      Source sequence(s)
      AK001719, AK024072, AL135744, BC014046, BP872403
      Consensus CDS
      CCDS9569.1
      UniProtKB/Swiss-Prot
      Q9Y5B9
      Related
      ENSP00000216297, OTTHUMP00000028337, ENST00000216297, OTTHUMT00000074025
      Conserved Domains (4) summary
      cd01091
      Location:180420
      Blast Score: 853
      CDC68-like; Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
      COG5406
      Location:5925
      Blast Score: 1566
      COG5406; Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
      pfam08644
      Location:529689
      Blast Score: 574
      SPT16; FACT complex subunit (SPT16/CDC68)
      pfam08512
      Location:806896
      Blast Score: 276
      Rtt106; Histone chaperone Rttp106-like

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000014.8 Reference GRCh37.p5 Primary Assembly

      Range
      21819631..21852425, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000146.1 Alternate HuRef

      Range
      1939467..1972279, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AL135744.4 (152411..185204) None
    genomic CH471078.2 EAW66386.1
      EAW66387.1
    mRNA AF164924.1 AAF28231.1
    mRNA AK001719.1 None
    mRNA AK024072.1 None
    mRNA AK091676.1 None
    mRNA BC000565.2 AAH00565.1
    mRNA BC012582.1 None
    mRNA BC014046.2 AAH14046.1
    mRNA BC064561.1 AAH64561.1
    mRNA BC073849.1 AAH73849.1
    mRNA BC111402.1 AAI11403.1
    mRNA BP872403.1 None
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0VGA3 GenPept UniProtKB/TrEMBL:Q0VGA3
    Q9Y5B9.1 GenPept UniProtKB/Swiss-Prot:Q9Y5B9

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