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sec16b SEC16 homolog B, endoplasmic reticulum export factor [ Salvelinus alpinus (Arctic char) ]

Gene ID: 111975652, updated on 15-Mar-2024

Summary

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Gene symbol
sec16b
Gene description
SEC16 homolog B, endoplasmic reticulum export factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus alpinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG16
Exon count:
24
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG16 NC_036856.1 (29702946..29736564)

Linkage Group LG16 - NC_036856.1Genomic Context describing neighboring genes Neighboring gene protein Dr1-like Neighboring gene guanine nucleotide binding protein (G protein), gamma 12b Neighboring gene growth arrest and DNA damage-inducible protein GADD45 alpha-like Neighboring gene uncharacterized LOC111975672 Neighboring gene zinc finger protein 648

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036856.1 Chromosome LG16 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in COPII vesicle coating IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein Sec16B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036856.1 Reference ASM291031v2 Primary Assembly

    Range
    29702946..29736564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024004135.1 → XP_023859903.1  protein transport protein Sec16B

    Conserved Domains (2) summary
    cd09233
    Location:334 → 693
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    pfam12932
    Location:286 → 359
    Sec16; Vesicle coat trafficking protein Sec16 mid-region

  2. XM_024004134.1 → XP_023859902.1  protein transport protein Sec16B

    Conserved Domains (2) summary
    cd09233
    Location:334 → 693
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    pfam12932
    Location:286 → 359
    Sec16; Vesicle coat trafficking protein Sec16 mid-region
Nucleotide Protein
Heading Accession and Version

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