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thbs2a thrombospondin 2a [ Salvelinus alpinus (Arctic char) ]

Gene ID: 111968072, updated on 15-Mar-2024

Summary

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Gene symbol
thbs2a
Gene description
thrombospondin 2a
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus alpinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Also known as
thbs2
Orthologs
human zebrafish all
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Genomic context

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See thbs2a in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
25
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG8 NC_036848.1 (50064164..50098460)

Linkage Group LG8 - NC_036848.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 27 Neighboring gene uncharacterized LOC111968071 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) Neighboring gene uncharacterized LOC111968076 Neighboring gene mitogen-activated protein kinase kinase kinase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036848.1 Chromosome LG8 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: thrombospondin-2
Names
thrombospondin 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036848.1 Reference ASM291031v2 Primary Assembly

    Range
    50064164..50098460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023993603.2 → XP_023849371.1  LOW QUALITY PROTEIN: thrombospondin-2

    Conserved Domains (9) summary
    smart00209
    Location:465 → 517
    TSP1; Thrombospondin type 1 repeats
    smart00210
    Location:57 → 237
    TSPN; Thrombospondin N-terminal -like domains
    sd00001
    Location:872 → 909
    TSP3; TSP3 repeat_long [structural motif]
    sd00002
    Location:814 → 848
    TSP3; TSP3 repeat_long [structural motif]
    pfam00093
    Location:346 → 400
    VWC; von Willebrand factor type C domain
    pfam00090
    Location:410 → 455
    TSP_1; Thrombospondin type 1 domain
    pfam02412
    Location:872 → 909
    TSP_3; Thrombospondin type 3 repeat
    pfam05735
    Location:999 → 1196
    TSP_C; Thrombospondin C-terminal region
    pfam12947
    Location:677 → 716
    EGF_3; EGF domain
Nucleotide Protein
Heading Accession and Version

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