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spty2d1 SPT2 chromatin protein domain containing 1 [ Salvelinus alpinus (Arctic char) ]

Gene ID: 111961985, updated on 15-Mar-2024

Summary

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Gene symbol
spty2d1
Gene description
SPT2 chromatin protein domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus alpinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG4q.1:29
Exon count:
6
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG4q.1:29 NC_036842.1 (41302035..41319393)

Linkage Group LG4q.1:29 - NC_036842.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 86A Neighboring gene uncharacterized LOC111960933 Neighboring gene UEV and lactate/malate dehyrogenase domains Neighboring gene formin-like protein 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036842.1 Chromosome LG4q.1:29 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SPT2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036842.1 Reference ASM291031v2 Primary Assembly

    Range
    41302035..41319393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023984704.1 → XP_023840472.1  protein SPT2 homolog isoform X1

    Conserved Domains (4) summary
    pfam07271
    Location:547 → 610
    Cytadhesin_P30; Cytadhesin P30/P32
    pfam08243
    Location:639 → 721
    SPT2; SPT2 chromatin protein
    cl25574
    Location:31 → 231
    TOP2c; TopoisomeraseII
    cl26464
    Location:284 → 609
    Atrophin-1; Atrophin-1 family

  2. XM_023984705.1 → XP_023840473.1  protein SPT2 homolog isoform X2

    Conserved Domains (3) summary
    pfam08243
    Location:618 → 700
    SPT2; SPT2 chromatin protein
    cl25574
    Location:31 → 231
    TOP2c; TopoisomeraseII
    cl26464
    Location:152 → 576
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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