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mmp24 matrix metallopeptidase 24 [ Salvelinus alpinus (Arctic char) ]

Gene ID: 111961292, updated on 15-Mar-2024

Summary

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Gene symbol
mmp24
Gene description
matrix metallopeptidase 24
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus alpinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs
human zebrafish all
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Genomic context

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See mmp24 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
9
Annotation release Status Assembly LG Location
101 current ASM291031v2 (GCF_002910315.2) LG1 NC_036838.1 (11874506..11957549)

Linkage Group LG1 - NC_036838.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 39 Neighboring gene growth/differentiation factor 5-like Neighboring gene eukaryotic translation initiation factor 6 Neighboring gene dynein, light chain, roadblock-type 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036838.1 Chromosome LG1 Reference ASM291031v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrix metalloproteinase-24

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM291031v2 Primary Assembly

Genomic

  1. NC_036838.1 Reference ASM291031v2 Primary Assembly

    Range
    11874506..11957549
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023983452.1 → XP_023839220.1  matrix metalloproteinase-24 isoform X1

    Conserved Domains (4) summary
    cd00094
    Location:337 → 529
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam00413
    Location:122 → 287
    Peptidase_M10; Matrixin
    pfam01471
    Location:41 → 94
    PG_binding_1; Putative peptidoglycan binding domain
    pfam11857
    Location:535 → 605
    DUF3377; Domain of unknown function (DUF3377)

  2. XM_023983460.1 → XP_023839228.1  matrix metalloproteinase-24 isoform X2

    Conserved Domains (4) summary
    cd00094
    Location:333 → 525
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam00413
    Location:122 → 287
    Peptidase_M10; Matrixin
    pfam01471
    Location:41 → 94
    PG_binding_1; Putative peptidoglycan binding domain
    pfam11857
    Location:531 → 601
    DUF3377; Domain of unknown function (DUF3377)
Nucleotide Protein
Heading Accession and Version

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