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LGI1 leucine rich glioma inactivated 1 [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111945584, updated on 15-Mar-2024

Summary

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Gene symbol
LGI1
Gene description
leucine rich glioma inactivated 1
See related
Ensembl:ENSCCEG00000018107
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Cyanistes
Orthologs
human mouse all
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Genomic context

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See LGI1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) Unplaced Scaffold NW_019799737.1 (419..17011)

NW_019799737.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111945586

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019799737 Unplaced Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich glioma-inactivated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019799737.1 Reference cyaCae2

    Range
    419..17011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023948252.1 → XP_023804020.1  leucine-rich glioma-inactivated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0VDU3
    Related
    ENSCCEP00000019965.1, ENSCCET00000030299.1
    Conserved Domains (5) summary
    TIGR00864
    Location:138 → 213
    PCC; polycystin cation channel protein
    sd00031
    Location:109 → 132
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:63 → 84
    LRR_RI; leucine-rich repeat [structural motif]
    pfam03736
    Location:496 → 535
    EPTP; EPTP domain
    pfam13855
    Location:107 → 167
    LRR_8; Leucine rich repeat

  2. XM_023948253.1 → XP_023804021.1  leucine-rich glioma-inactivated protein 1 isoform X2

    Conserved Domains (4) summary
    TIGR00864
    Location:35 → 110
    PCC; polycystin cation channel protein
    sd00031
    Location:6 → 29
    LRR_1; leucine-rich repeat [structural motif]
    pfam03736
    Location:393 → 432
    EPTP; EPTP domain
    pfam13855
    Location:4 → 62
    LRR_8; Leucine rich repeat
Nucleotide Protein
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