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TSEN54 tRNA splicing endonuclease subunit 54 [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111942931, updated on 15-Mar-2024

Summary

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Gene symbol
TSEN54
Gene description
tRNA splicing endonuclease subunit 54
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Cyanistes
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) Unplaced Scaffold NW_019783365.1 (1489..10539, complement)

NW_019783365.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019783365 Unplaced Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in tRNA-type intron splice site recognition and cleavage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of tRNA-intron endonuclease complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA-splicing endonuclease subunit Sen54

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019783365.1 Reference cyaCae2

    Range
    1489..10539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023945985.1 → XP_023801753.1  tRNA-splicing endonuclease subunit Sen54

    UniProtKB/TrEMBL
    A0A8C0U795
    Conserved Domains (2) summary
    pfam12928
    Location:72 → 137
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    cl27367
    Location:119 → 175
    tRNA_int_endo_N; tRNA intron endonuclease, N-terminal domain
Nucleotide Protein
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Gene LinkOut

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