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SOX18 SRY-box transcription factor 18 [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111938187, updated on 15-Mar-2024

Summary

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Gene symbol
SOX18
Gene description
SRY-box transcription factor 18
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Cyanistes
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
2
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) 20 Unlocalized Scaffold NW_019776521.1 (5150690..5154033)

NW_019776521.1Genomic Context describing neighboring genes Neighboring gene regulator of G protein signaling 19 Neighboring gene transcription elongation factor A2 Neighboring gene uncharacterized LOC111938106 Neighboring gene pre-mRNA processing factor 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019776521 Chromosome 20 Unlocalized Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lymphangiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vasculogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-18
Names
SRY-box 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019776521.1 Reference cyaCae2

    Range
    5150690..5154033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023939817.1 → XP_023795585.1  transcription factor SOX-18

    UniProtKB/TrEMBL
    A0A8C0VNA7
    Conserved Domains (2) summary
    cd01388
    Location:12 → 83
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam12067
    Location:134 → 181
    Sox17_18_mid; Sox 17/18 central domain
Nucleotide Protein
Heading Accession and Version

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