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ATF4 activating transcription factor 4 [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111934860, updated on 15-Mar-2024

Summary

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Gene symbol
ATF4
Gene description
activating transcription factor 4
See related
Ensembl:ENSCCEG00000005689
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Cyanistes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) 1 Unlocalized Scaffold NW_019776201.1 (27716455..27719189, complement)

NW_019776201.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S19 binding protein 1 Neighboring gene uncharacterized LOC111934854 Neighboring gene beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase Neighboring gene uncharacterized LOC111934887

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019776201 Chromosome 1 Unlocalized Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ATF1-ATF4 transcription factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ATF4-CREB1 transcription factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019776201.1 Reference cyaCae2

    Range
    27716455..27719189 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023935021.1 → XP_023790789.1  cyclic AMP-dependent transcription factor ATF-4

    UniProtKB/TrEMBL
    A0A8C0UBI1, A0A8C0Z9X8
    Related
    ENSCCEP00000005178.1, ENSCCET00000008538.1
    Conserved Domains (1) summary
    cd14692
    Location:286 → 342
    bZIP_ATF4; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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