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CDHR1 cadherin related family member 1 [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111931593, updated on 15-Mar-2024

Summary

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Gene symbol
CDHR1
Gene description
cadherin related family member 1
See related
Ensembl:ENSCCEG00000019831
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Cyanistes
Orthologs
human mouse all
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Genomic context

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See CDHR1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
18
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) 6 Unlocalized Scaffold NW_019776427.1 (7254454..7299760, complement)

NW_019776427.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 1 Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 2 Neighboring gene uncharacterized LOC111931594 Neighboring gene growth hormone inducible transmembrane protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019776427 Chromosome 6 Unlocalized Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-related family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019776427.1 Reference cyaCae2

    Range
    7254454..7299760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023930309.1 → XP_023786077.1  cadherin-related family member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0VD63, A0A8C0VI96
    Related
    ENSCCEP00000021908.1, ENSCCET00000033302.1
    Conserved Domains (1) summary
    cd11304
    Location:480 → 575
    Cadherin_repeat; Cadherin tandem repeat domain

  2. XM_023930307.1 → XP_023786075.1  cadherin-related family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0VI96
    Conserved Domains (1) summary
    cd11304
    Location:472 → 567
    Cadherin_repeat; Cadherin tandem repeat domain

  3. XM_023930308.1 → XP_023786076.1  cadherin-related family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0VI96
    Conserved Domains (1) summary
    cd11304
    Location:472 → 567
    Cadherin_repeat; Cadherin tandem repeat domain
Nucleotide Protein
Heading Accession and Version

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