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SHROOM3 shroom family member 3 [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111929491, updated on 15-Mar-2024

Summary

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Gene symbol
SHROOM3
Gene description
shroom family member 3
See related
Ensembl:ENSCCEG00000022181
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Cyanistes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) 4 Unlocalized Scaffold NW_019776392.1 (1376874..1494949)

NW_019776392.1Genomic Context describing neighboring genes Neighboring gene starch binding domain 1 Neighboring gene coiled-coil domain containing 158 Neighboring gene 16 kDa beta-galactoside-binding lectin Neighboring gene septin 11 Neighboring gene cyclin I

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019776392 Chromosome 4 Unlocalized Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Shroom3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019776392.1 Reference cyaCae2

    Range
    1376874..1494949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023927102.1 → XP_023782870.1  protein Shroom3 isoform X5

    Conserved Domains (2) summary
    pfam08687
    Location:1516 → 1628
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:712 → 889
    ASD1; Apx/Shroom domain ASD1

  2. XM_023927100.1 → XP_023782868.1  protein Shroom3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0VJW2
    Related
    ENSCCEP00000025095.1, ENSCCET00000037495.1
    Conserved Domains (2) summary
    pfam08687
    Location:1516 → 1800
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:712 → 889
    ASD1; Apx/Shroom domain ASD1

  3. XM_023927101.1 → XP_023782869.1  protein Shroom3 isoform X4

    UniProtKB/TrEMBL
    A0A8C0VMX6
    Related
    ENSCCEP00000025096.1, ENSCCET00000037496.1
    Conserved Domains (2) summary
    pfam08687
    Location:1490 → 1774
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:686 → 863
    ASD1; Apx/Shroom domain ASD1

  4. XM_023927099.1 → XP_023782867.1  protein Shroom3 isoform X2

    Conserved Domains (3) summary
    cd00992
    Location:33 → 106
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam08687
    Location:1689 → 1973
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:886 → 1063
    ASD1; Apx/Shroom domain ASD1

  5. XM_023927097.1 → XP_023782865.1  protein Shroom3 isoform X1

    Conserved Domains (3) summary
    cd00992
    Location:33 → 106
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam08687
    Location:1690 → 1974
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:886 → 1063
    ASD1; Apx/Shroom domain ASD1
Nucleotide Protein
Heading Accession and Version

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