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TET2 tet methylcytosine dioxygenase 2 [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111927752, updated on 15-Mar-2024

Summary

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Gene symbol
TET2
Gene description
tet methylcytosine dioxygenase 2
See related
Ensembl:ENSCCEG00000011825
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Cyanistes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) 4 Unlocalized Scaffold NW_019776357.1 (1457916..1480015)

NW_019776357.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111927751 Neighboring gene uncharacterized LOC111928337 Neighboring gene uncharacterized LOC111927753 Neighboring gene inorganic pyrophosphatase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019776357 Chromosome 4 Unlocalized Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5-methylcytosine dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 5-methylcytosine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in myeloid cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oxidative demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methylcytosine dioxygenase TET2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019776357.1 Reference cyaCae2

    Range
    1457916..1480015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023924687.1 → XP_023780455.1  methylcytosine dioxygenase TET2

    UniProtKB/TrEMBL
    A0A8C0UN87
    Related
    ENSCCEP00000012215.1, ENSCCET00000019041.1
    Conserved Domains (2) summary
    pfam12851
    Location:1268 → 1430
    Tet_JBP; Oxygenase domain of the 2OGFeDO superfamily
    cl25764
    Location:500 → 737
    PAT1; Topoisomerase II-associated protein PAT1
Nucleotide Protein
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