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fdft1 farnesyl-diphosphate farnesyltransferase 1 [ Paramormyrops kingsleyae ]

Gene ID: 111841359, updated on 15-Mar-2024

Summary

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Gene symbol
fdft1
Gene description
farnesyl-diphosphate farnesyltransferase 1
See related
Ensembl:ENSPKIG00000004839
Gene type
protein coding
RefSeq status
MODEL
Organism
Paramormyrops kingsleyae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Mormyridae; Paramormyrops
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current PKINGS_0.1 (GCF_002872115.1) Unplaced Scaffold NW_019716043.1 (1158810..1167054)

NW_019716043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111841249 Neighboring gene GATA binding protein 4 Neighboring gene cathepsin B Neighboring gene interferon-induced protein 44-like Neighboring gene interferon-induced protein 44-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019716043 Unplaced Scaffold Reference PKINGS_0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables farnesyl-diphosphate farnesyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables squalene synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squalene synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paramormyrops kingsleyae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PKINGS_0.1

Genomic

  1. NW_019716043.1 Reference PKINGS_0.1

    Range
    1158810..1167054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023807056.1 → XP_023662824.1  squalene synthase isoform X3

    UniProtKB/TrEMBL
    A0A3B3RMY2

  2. XM_023807055.1 → XP_023662823.1  squalene synthase isoform X2

    UniProtKB/TrEMBL
    A0A3B3RMY2, A0A3B3RQ12
    Related
    ENSPKIP00000019811.1, ENSPKIT00000000412.1

  3. XM_023807054.1 → XP_023662822.1  squalene synthase isoform X1

    UniProtKB/TrEMBL
    A0A3B3RMY2, A0A3B3RNI2
    Related
    ENSPKIP00000019848.1, ENSPKIT00000000449.1
Nucleotide Protein
Heading Accession and Version

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