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ELOA elongin A [ Equus caballus (horse) ]

Gene ID: 111772416, updated on 15-Mar-2024

Summary

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Gene symbol
ELOA
Gene description
elongin A
See related
Ensembl:ENSECAG00000018195
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (31349923..31365249, complement)

Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106782784 Neighboring gene PITH domain-containing protein 1-like Neighboring gene ribosomal protein L11 Neighboring gene 60S ribosomal protein L11 Neighboring gene elongation factor 1-alpha, somatic form-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009145.3 Chromosome 2 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of elongin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongin-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009145.3 Reference EquCab3.0 Primary Assembly

    Range
    31349923..31365249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023635512.1 → XP_023491280.1  elongin-A isoform X2

    UniProtKB/TrEMBL
    F7CTT6
    Related
    ENSECAP00000015945.3, ENSECAT00000019480.3
    Conserved Domains (2) summary
    cd00183
    Location:37 → 76
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    pfam06881
    Location:565 → 663
    Elongin_A; RNA polymerase II transcription factor SIII (Elongin) subunit A

  2. XM_023635511.1 → XP_023491279.1  elongin-A isoform X1

    UniProtKB/TrEMBL
    A0A9L0RL33, F7CTT6
    Related
    ENSECAP00000064626.1, ENSECAT00000080742.1
    Conserved Domains (2) summary
    cd00183
    Location:37 → 76
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    pfam06881
    Location:565 → 663
    Elongin_A; RNA polymerase II transcription factor SIII (Elongin) subunit A
Nucleotide Protein
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