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PCDH19 protocadherin 19 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 111721616, updated on 15-Mar-2024

Summary

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Gene symbol
PCDH19
Gene description
protocadherin 19
See related
Ensembl:ENSSHAG00000026076
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See PCDH19 in Genome Data Viewer
Location:
chromosome: X
Exon count:
6
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) X NC_045432.1 (71909847..72020647, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) X Unlocalized Scaffold NW_003849623.1 (208741..256216)

Chromosome X - NC_045432.1Genomic Context describing neighboring genes Neighboring gene casein kinase I pseudogene Neighboring gene lysine-specific demethylase 2A pseudogene Neighboring gene chromatin target of PRMT1 protein-like Neighboring gene tenomodulin Neighboring gene tetraspanin 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045432.1 Reference mSarHar1.11 Primary Assembly

    Range
    71909847..72020647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031945164.1 → XP_031801024.1  protocadherin-19 isoform X4

    UniProtKB/TrEMBL
    A0A7N4P3X3
    Conserved Domains (2) summary
    cd11304
    Location:240 → 340
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:26 → 104
    Cadherin_2; Cadherin-like

  2. XM_031945163.1 → XP_031801023.1  protocadherin-19 isoform X3

    UniProtKB/TrEMBL
    A0A7N4P3X3, A0A7N4PU51
    Related
    ENSSHAP00000043536.1, ENSSHAT00000049452.1
    Conserved Domains (2) summary
    cd11304
    Location:240 → 340
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:26 → 104
    Cadherin_2; Cadherin-like

  3. XM_031945162.1 → XP_031801022.1  protocadherin-19 isoform X2

    UniProtKB/TrEMBL
    A0A7N4P3X3
    Conserved Domains (2) summary
    cd11304
    Location:240 → 340
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:26 → 104
    Cadherin_2; Cadherin-like

  4. XM_031945161.1 → XP_031801021.1  protocadherin-19 isoform X1

    UniProtKB/TrEMBL
    A0A7N4P3X3
    Related
    ENSSHAP00000032784.1, ENSSHAT00000033531.1
    Conserved Domains (2) summary
    cd11304
    Location:240 → 340
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:26 → 104
    Cadherin_2; Cadherin-like
Nucleotide Protein
Heading Accession and Version

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