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mid2 midline 2 [ Seriola lalandi dorsalis ]

Gene ID: 111658551, updated on 15-Mar-2024

Summary

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Gene symbol
mid2
Gene description
midline 2
See related
Ensembl:ENSSLDG00000008120
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola lalandi dorsalis (sub-species: dorsalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019525004.1 (8951..150794, complement)

NW_019525004.1Genomic Context describing neighboring genes Neighboring gene TSC22 domain family, member 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019525004 Unplaced Scaffold Reference Sedor1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable E3 ubiquitin-protein ligase MID2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sedor1 Primary Assembly

Genomic

  1. NW_019525004.1 Reference Sedor1 Primary Assembly

    Range
    8951..150794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023411129.1 → XP_023266897.1  probable E3 ubiquitin-protein ligase MID2 isoform X1

    UniProtKB/TrEMBL
    A0A3B4X244
    Conserved Domains (6) summary
    smart00502
    Location:299 → 422
    BBC; B-Box C-terminal domain
    smart00336
    Location:175 → 208
    BBOX; B-Box-type zinc finger
    cd00021
    Location:231 → 268
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd00063
    Location:459 → 559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13739
    Location:564 → 733
    SPRY_PRY_TRIM1; PRY/SPRY domain of tripartite motif-binding protein 1 (TRIM1) or MID2
    cd16753
    Location:8 → 61
    RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins

  2. XM_023411130.1 → XP_023266898.1  probable E3 ubiquitin-protein ligase MID2 isoform X2

    UniProtKB/TrEMBL
    A0A3B4X244
    Related
    ENSSLDP00000010215.1, ENSSLDT00000010585.1
    Conserved Domains (6) summary
    smart00502
    Location:275 → 400
    BBC; B-Box C-terminal domain
    smart00336
    Location:175 → 208
    BBOX; B-Box-type zinc finger
    cd00021
    Location:231 → 268
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd00063
    Location:437 → 537
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13739
    Location:542 → 711
    SPRY_PRY_TRIM1; PRY/SPRY domain of tripartite motif-binding protein 1 (TRIM1) or MID2
    cd16753
    Location:8 → 61
    RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins

  3. XM_023411126.1 → XP_023266894.1  probable E3 ubiquitin-protein ligase MID2 isoform X1

    UniProtKB/TrEMBL
    A0A3B4X244
    Conserved Domains (6) summary
    smart00502
    Location:299 → 422
    BBC; B-Box C-terminal domain
    smart00336
    Location:175 → 208
    BBOX; B-Box-type zinc finger
    cd00021
    Location:231 → 268
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd00063
    Location:459 → 559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13739
    Location:564 → 733
    SPRY_PRY_TRIM1; PRY/SPRY domain of tripartite motif-binding protein 1 (TRIM1) or MID2
    cd16753
    Location:8 → 61
    RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins

  4. XM_023411127.1 → XP_023266895.1  probable E3 ubiquitin-protein ligase MID2 isoform X1

    UniProtKB/TrEMBL
    A0A3B4X244
    Conserved Domains (6) summary
    smart00502
    Location:299 → 422
    BBC; B-Box C-terminal domain
    smart00336
    Location:175 → 208
    BBOX; B-Box-type zinc finger
    cd00021
    Location:231 → 268
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd00063
    Location:459 → 559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13739
    Location:564 → 733
    SPRY_PRY_TRIM1; PRY/SPRY domain of tripartite motif-binding protein 1 (TRIM1) or MID2
    cd16753
    Location:8 → 61
    RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins

  5. XM_023411128.1 → XP_023266896.1  probable E3 ubiquitin-protein ligase MID2 isoform X1

    UniProtKB/TrEMBL
    A0A3B4X244
    Conserved Domains (6) summary
    smart00502
    Location:299 → 422
    BBC; B-Box C-terminal domain
    smart00336
    Location:175 → 208
    BBOX; B-Box-type zinc finger
    cd00021
    Location:231 → 268
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd00063
    Location:459 → 559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd13739
    Location:564 → 733
    SPRY_PRY_TRIM1; PRY/SPRY domain of tripartite motif-binding protein 1 (TRIM1) or MID2
    cd16753
    Location:8 → 61
    RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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