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sema6d semaphorin 6D [ Seriola lalandi dorsalis ]

Gene ID: 111654714, updated on 24-Mar-2024

Summary

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Gene symbol
sema6d
Gene description
semaphorin 6D
See related
Ensembl:ENSSLDG00000021909
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola lalandi dorsalis (sub-species: dorsalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Also known as
sema6dl
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019524839.1 (443325..464053, complement)

NW_019524839.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 24 member 5 Neighboring gene RING finger protein 148-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019524839 Unplaced Scaffold Reference Sedor1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-6D
Names
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sedor1 Primary Assembly

Genomic

  1. NW_019524839.1 Reference Sedor1 Primary Assembly

    Range
    443325..464053 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023405837.1 → XP_023261605.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    A0A3B4YCQ6, A0A3B4YJU7
    Related
    ENSSLDP00000028383.1, ENSSLDT00000029226.1
    Conserved Domains (2) summary
    pfam01437
    Location:519 → 573
    PSI; Plexin repeat
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_023405838.1 → XP_023261606.1  semaphorin-6D isoform X2

    UniProtKB/TrEMBL
    A0A3B4YCQ6, A0A3B4YJG3
    Related
    ENSSLDP00000028411.1, ENSSLDT00000029254.1
    Conserved Domains (2) summary
    pfam01437
    Location:519 → 573
    PSI; Plexin repeat
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  3. XM_023405839.1 → XP_023261607.1  semaphorin-6D isoform X3

    UniProtKB/TrEMBL
    A0A3B4YCQ6, A0A3B4YFQ3
    Related
    ENSSLDP00000028447.1, ENSSLDT00000029290.1
    Conserved Domains (2) summary
    pfam01437
    Location:519 → 573
    PSI; Plexin repeat
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  4. XM_023405835.1 → XP_023261603.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    A0A3B4YCQ6, A0A3B4YJU7
    Conserved Domains (2) summary
    pfam01437
    Location:519 → 573
    PSI; Plexin repeat
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  5. XM_023405840.1 → XP_023261608.1  semaphorin-6D isoform X4

    UniProtKB/TrEMBL
    A0A3B4YCQ6, A0A3B4YJN3
    Related
    ENSSLDP00000028481.1, ENSSLDT00000029324.1
    Conserved Domains (2) summary
    pfam01437
    Location:519 → 573
    PSI; Plexin repeat
    cl15693
    Location:54 → 518
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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