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rtn4a reticulon 4a [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111584821, updated on 3-Apr-2024

Summary

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Gene symbol
rtn4a
Gene description
reticulon 4a
See related
EnsemblRapid:ENSAOCG00000015777
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Also known as
rtn4
Orthologs
human zebrafish all
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Genomic context

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See rtn4a in Genome Data Viewer
Location:
chromosome: 16
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 16 NC_072781.1 (28271667..28319901)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019374156.1 (37775..86735)

Chromosome 16 - NC_072781.1Genomic Context describing neighboring genes Neighboring gene clathrin heavy chain linker domain-containing protein 1 Neighboring gene ribosomal protein S27a Neighboring gene echinoderm microtubule-associated protein-like 6 Neighboring gene uncharacterized LOC129350834 Neighboring gene spectrin beta chain, non-erythrocytic 1 Neighboring gene uncharacterized LOC129350824

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum tubular network formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
reticulon-4a
Names
reticulon 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072781.1 Reference ASM2253959v1 Primary Assembly

    Range
    28271667..28319901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023294106.2 → XP_023149874.2  reticulon-4a isoform X1

  2. XM_023294107.3 → XP_023149875.1  reticulon-4a isoform X2

    Related
    ENSAOCP00000027094.2, ENSAOCT00000030254.2
    Conserved Domains (1) summary
    pfam02453
    Location:674 → 838
    Reticulon

  3. XM_023294108.3 → XP_023149876.2  reticulon-4a isoform X3

    Related
    ENSAOCP00000033831.1, ENSAOCT00000058275.1

  4. XM_023294110.3 → XP_023149878.2  reticulon-4a isoform X5

    Related
    ENSAOCP00000045301.1, ENSAOCT00000080607.1

  5. XM_023294109.3 → XP_023149877.1  reticulon-4a isoform X4

    UniProtKB/TrEMBL
    A0A3Q1D811
    Conserved Domains (1) summary
    pfam02453
    Location:193 → 357
    Reticulon

  6. XM_023294112.3 → XP_023149880.1  reticulon-4a isoform X6

    UniProtKB/TrEMBL
    A0A3Q1D811
    Related
    ENSAOCP00000048858.1, ENSAOCT00000040119.1
    Conserved Domains (1) summary
    pfam02453
    Location:177 → 339
    Reticulon

  7. XM_023294113.3 → XP_023149881.1  reticulon-4a isoform X7

    UniProtKB/TrEMBL
    A0A3Q1BBN1
    Conserved Domains (1) summary
    pfam02453
    Location:20 → 184
    Reticulon

  8. XM_023294114.3 → XP_023149882.1  reticulon-4a isoform X8

    UniProtKB/TrEMBL
    A0A3Q1BBN1
    Related
    ENSAOCP00000011450.2, ENSAOCT00000018850.2
    Conserved Domains (1) summary
    pfam02453
    Location:6 → 170
    Reticulon
Nucleotide Protein
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