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pgd phosphogluconate dehydrogenase [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111573226, updated on 15-Mar-2024

Summary

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Gene symbol
pgd
Gene description
phosphogluconate dehydrogenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 8 NC_072773.1 (33931069..33939959)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019372733.1 (405139..414016)

Chromosome 8 - NC_072773.1Genomic Context describing neighboring genes Neighboring gene ubiquitination factor E4B, UFD2 homolog (S. cerevisiae) Neighboring gene kinesin family member 1B Neighboring gene TAR DNA binding protein a Neighboring gene chromosome 8 C1orf127 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphogluconate dehydrogenase (decarboxylating) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-gluconate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
6-phosphogluconate dehydrogenase, decarboxylating

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072773.1 Reference ASM2253959v1 Primary Assembly

    Range
    33931069..33939959
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023277286.3 → XP_023133054.1  6-phosphogluconate dehydrogenase, decarboxylating

    UniProtKB/TrEMBL
    A0A3Q1BRL8
    Conserved Domains (1) summary
    PRK09287
    Location:14 → 473
    PRK09287; 6-phosphogluconate dehydrogenase; Validated
Nucleotide Protein
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