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tsr1 TSR1 ribosome maturation factor [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111569732, updated on 15-Mar-2024

Summary

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Gene symbol
tsr1
Gene description
TSR1 ribosome maturation factor
See related
EnsemblRapid:ENSAOCG00000023284
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 7 NC_072772.1 (1549750..1562292, complement)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019372217.1 (782716..795353, complement)

Chromosome 7 - NC_072772.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118470412 Neighboring gene hypermethylated in cancer 1 Neighboring gene uncharacterized LOC129349368 Neighboring gene TAO kinase 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U3 snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-rRNA-processing protein TSR1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072772.1 Reference ASM2253959v1 Primary Assembly

    Range
    1549750..1562292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023272045.3 → XP_023127813.2  pre-rRNA-processing protein TSR1 homolog isoform X2

    Related
    ENSAOCP00000041496.1, ENSAOCT00000069952.1

  2. XM_023272044.3 → XP_023127812.2  pre-rRNA-processing protein TSR1 homolog isoform X1

    Related
    ENSAOCP00000018113.2, ENSAOCT00000032985.2
Nucleotide Protein
Heading Accession and Version

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