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vps36 vacuolar protein sorting 36 homolog [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111566141, updated on 15-Mar-2024

Summary

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Gene symbol
vps36
Gene description
vacuolar protein sorting 36 homolog
See related
EnsemblRapid:ENSAOCG00000016919
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 14 NC_072779.1 (11699749..11704596, complement)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019370010.1 (261112..265990)

Chromosome 14 - NC_072779.1Genomic Context describing neighboring genes Neighboring gene transmembrane phosphatase with tensin homology Neighboring gene fibrinogen like 1B Neighboring gene thrombospondin type-1 domain-containing protein 1 Neighboring gene proline and serine rich 1 Neighboring gene stomatin (EPB72)-like 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT II complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein-sorting-associated protein 36

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072779.1 Reference ASM2253959v1 Primary Assembly

    Range
    11699749..11704596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023266577.3 → XP_023122345.1  vacuolar protein-sorting-associated protein 36

    UniProtKB/TrEMBL
    A0A3Q1BIE3, A0A3Q1CQI6
    Related
    ENSAOCP00000042797.1, ENSAOCT00000043297.1
    Conserved Domains (2) summary
    cd13226
    Location:1 → 127
    PH-GRAM-like_Eap45; Pleckstrin homology-like domain or GLUE (GRAM-like ubiquitin-binding in Eap45) domain of Eap45
    pfam04157
    Location:154 → 369
    EAP30; EAP30/Vps36 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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