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pax4 paired box 4 [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111563998, updated on 15-Mar-2024

Summary

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Gene symbol
pax4
Gene description
paired box 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 21
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 21 NC_072786.1 (14165082..14172678)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019371739.1 (309156..316594, complement)

Chromosome 21 - NC_072786.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111578152 Neighboring gene uncharacterized LOC129347932 Neighboring gene staphylococcal nuclease and tudor domain containing 1 Neighboring gene leucine rich repeat containing 4.1 Neighboring gene calcium channel, voltage-dependent, alpha 2/delta subunit 1a Neighboring gene hepatocyte growth factor a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired box protein Pax-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072786.1 Reference ASM2253959v1 Primary Assembly

    Range
    14165082..14172678
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035945005.2 → XP_035800898.2  paired box protein Pax-4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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