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COL5A2 collagen type V alpha 2 chain [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

Gene ID: 111542823, updated on 15-Mar-2024

Summary

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Gene symbol
COL5A2
Gene description
collagen type V alpha 2 chain
See related
Ensembl:ENSPTEG00000021769
Gene type
protein coding
RefSeq status
MODEL
Organism
Piliocolobus tephrosceles
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
54
Annotation release Status Assembly Chr Location
102 current ASM277652v3 (GCF_002776525.3) 11 NC_045444.1 (75039632..75188138, complement)
100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019317220.1 (13958307..14106612, complement)

Chromosome 11 - NC_045444.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111542746 Neighboring gene collagen type III alpha 1 chain Neighboring gene keratin, type I cytoskeletal 18 pseudogene Neighboring gene WD repeat domain 75

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in skin development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen type V trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-2(V) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM277652v3

Genomic

  1. NC_045444.1 Reference ASM277652v3

    Range
    75039632..75188138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023212406.3 → XP_023068174.1  collagen alpha-2(V) chain

    UniProtKB/TrEMBL
    A0A8C9HFH1
    Related
    ENSPTEP00000020557.1
    Conserved Domains (4) summary
    pfam01391
    Location:495 → 553
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:41 → 96
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1267 → 1498
    COLFI; Fibrillar collagen C-terminal domain
    cl26386
    Location:374 → 566
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
Nucleotide Protein
Heading Accession and Version

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