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KDM2A lysine demethylase 2A [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

Gene ID: 111522325, updated on 15-Mar-2024

Summary

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Gene symbol
KDM2A
Gene description
lysine demethylase 2A
See related
Ensembl:ENSPTEG00000031623
Gene type
protein coding
RefSeq status
MODEL
Organism
Piliocolobus tephrosceles
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
25
Annotation release Status Assembly Chr Location
102 current ASM277652v3 (GCF_002776525.3) 13 NC_045446.1 (6865513..7012396, complement)
100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019318145.1 (4109189..4255913)

Chromosome 13 - NC_045446.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 13D Neighboring gene slingshot protein phosphatase 3 Neighboring gene small nucleolar RNA U13 Neighboring gene ras homolog family member D Neighboring gene synaptotagmin 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 2A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM277652v3

Genomic

  1. NC_045446.1 Reference ASM277652v3

    Range
    6865513..7012396 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023186306.1 → XP_023042074.1  lysine-specific demethylase 2A isoform X3

    UniProtKB/TrEMBL
    A0A8C9I9S1
    Conserved Domains (6) summary
    pfam02008
    Location:481 → 514
    zf-CXXC; CXXC zinc finger domain
    sd00034
    Location:835 → 859
    LRR_AMN1; leucine-rich repeat [structural motif]
    cd15643
    Location:524 → 580
    PHD_KDM2A; PHD finger found in Lysine-specific demethylase 2A (KDM2A)
    pfam12937
    Location:801 → 839
    F-box-like
    cl21464
    Location:104 → 204
    cupin_like; Conserved domain found in cupin and related proteins
    cl28166
    Location:880 → 1043
    AMN1; Antagonist of mitotic exit network protein 1

  2. XM_023186303.3 → XP_023042071.1  lysine-specific demethylase 2A isoform X1

    UniProtKB/TrEMBL
    A0A8C9I9S1
    Conserved Domains (6) summary
    pfam02008
    Location:576 → 609
    zf-CXXC; CXXC zinc finger domain
    sd00034
    Location:930 → 954
    LRR_AMN1; leucine-rich repeat [structural motif]
    cd15643
    Location:619 → 675
    PHD_KDM2A; PHD finger found in Lysine-specific demethylase 2A (KDM2A)
    pfam12937
    Location:896 → 934
    F-box-like
    cl21464
    Location:199 → 299
    cupin_like; Conserved domain found in cupin and related proteins
    cl28166
    Location:975 → 1138
    AMN1; Antagonist of mitotic exit network protein 1

  3. XM_023186307.1 → XP_023042075.1  lysine-specific demethylase 2A isoform X4

    UniProtKB/TrEMBL
    A0A8C9IMD1
    Related
    ENSPTEP00000033041.1, ENSPTET00000045335.1
    Conserved Domains (5) summary
    pfam02008
    Location:137 → 170
    zf-CXXC; CXXC zinc finger domain
    sd00034
    Location:491 → 515
    LRR_AMN1; leucine-rich repeat [structural motif]
    cd15643
    Location:180 → 236
    PHD_KDM2A; PHD finger found in Lysine-specific demethylase 2A (KDM2A)
    pfam12937
    Location:457 → 495
    F-box-like
    cl28166
    Location:536 → 699
    AMN1; Antagonist of mitotic exit network protein 1

  4. XM_023186304.2 → XP_023042072.1  lysine-specific demethylase 2A isoform X1

    UniProtKB/TrEMBL
    A0A8C9I9S1
    Conserved Domains (6) summary
    pfam02008
    Location:576 → 609
    zf-CXXC; CXXC zinc finger domain
    sd00034
    Location:930 → 954
    LRR_AMN1; leucine-rich repeat [structural motif]
    cd15643
    Location:619 → 675
    PHD_KDM2A; PHD finger found in Lysine-specific demethylase 2A (KDM2A)
    pfam12937
    Location:896 → 934
    F-box-like
    cl21464
    Location:199 → 299
    cupin_like; Conserved domain found in cupin and related proteins
    cl28166
    Location:975 → 1138
    AMN1; Antagonist of mitotic exit network protein 1

  5. XM_023186305.3 → XP_023042073.1  lysine-specific demethylase 2A isoform X2

    UniProtKB/TrEMBL
    A0A8C9I9S1
    Related
    ENSPTEP00000033039.1
    Conserved Domains (6) summary
    pfam02008
    Location:559 → 592
    zf-CXXC; CXXC zinc finger domain
    sd00034
    Location:913 → 937
    LRR_AMN1; leucine-rich repeat [structural motif]
    cd15643
    Location:602 → 658
    PHD_KDM2A; PHD finger found in Lysine-specific demethylase 2A (KDM2A)
    pfam12937
    Location:879 → 917
    F-box-like
    cl21464
    Location:182 → 282
    cupin_like; Conserved domain found in cupin and related proteins
    cl28166
    Location:958 → 1121
    AMN1; Antagonist of mitotic exit network protein 1
Nucleotide Protein
Heading Accession and Version

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