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thpo thrombopoietin [ Seriola dumerili (greater amberjack) ]

Gene ID: 111238992, updated on 15-Mar-2024

Summary

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Gene symbol
thpo
Gene description
thrombopoietin
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019176076.1 (627376..630359, complement)

NW_019176076.1Genomic Context describing neighboring genes Neighboring gene period circadian clock 2 Neighboring gene solute carrier family 12 member 9-like Neighboring gene zona pellucida sperm-binding protein 4-like Neighboring gene chloride channel, voltage-sensitive 2a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019176076 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hormone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thrombopoietin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019176076.1 Reference Sdu_1.0 Primary Assembly

    Range
    627376..630359 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022768746.1 → XP_022624467.1  thrombopoietin isoform X1

    Conserved Domains (1) summary
    pfam00758
    Location:40 → 113
    EPO_TPO; Erythropoietin/thrombopoietin

  2. XM_022768747.1 → XP_022624468.1  thrombopoietin isoform X2

    Conserved Domains (1) summary
    pfam00758
    Location:40 → 113
    EPO_TPO; Erythropoietin/thrombopoietin
Nucleotide Protein
Heading Accession and Version

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