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pars2 prolyl-tRNA synthetase 2, mitochondrial [ Seriola dumerili (greater amberjack) ]

Gene ID: 111238409, updated on 15-Mar-2024

Summary

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Gene symbol
pars2
Gene description
prolyl-tRNA synthetase 2, mitochondrial
See related
Ensembl:ENSSDUG00000012630
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174257.1 (8766413..8769948)

NW_019174257.1Genomic Context describing neighboring genes Neighboring gene SH3GL interacting endocytic adaptor 1a Neighboring gene insulin-like 5a Neighboring gene uncharacterized LOC111222483 Neighboring gene tetratricopeptide repeat domain 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174257 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proline-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in prolyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable proline--tRNA ligase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174257.1 Reference Sdu_1.0 Primary Assembly

    Range
    8766413..8769948
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022767930.1 → XP_022623651.1  probable proline--tRNA ligase, mitochondrial

    UniProtKB/TrEMBL
    A0A3B4UGG1, A0A3B4UHY2
    Related
    ENSSDUP00000017290.1, ENSSDUT00000017605.1
    Conserved Domains (2) summary
    cd00779
    Location:71 → 361
    ProRS_core_prok; Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of ...
    cl00266
    Location:376 → 464
    HGTP_anticodon; HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for ...

  2. XM_022768016.1 → XP_022623737.1  probable proline--tRNA ligase, mitochondrial

    UniProtKB/TrEMBL
    A0A3B4UGG1, A0A3B4UHY2
    Related
    ENSSDUP00000017288.1, ENSSDUT00000017603.1
    Conserved Domains (2) summary
    cd00779
    Location:71 → 361
    ProRS_core_prok; Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of ...
    cl00266
    Location:376 → 464
    HGTP_anticodon; HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for ...
Nucleotide Protein
Heading Accession and Version

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