U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

c5 complement component 5 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111238159, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
c5
Gene description
complement component 5
See related
Ensembl:ENSSDUG00000019128
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
42
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019175461.1 (16967..41353)

NW_019175461.1Genomic Context describing neighboring genes Neighboring gene PR domain zinc finger protein 12-like Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene transfer RNA serine (anticodon GCU)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_019175461 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
complement C5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019175461.1 Reference Sdu_1.0 Primary Assembly

    Range
    16967..41353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022767568.1 → XP_022623289.1  complement C5

    UniProtKB/TrEMBL
    A0A3B4V6S2
    Related
    ENSSDUP00000026463.1, ENSSDUT00000026935.1
    Conserved Domains (7) summary
    pfam00207
    Location:773 → 861
    A2M; Alpha-2-macroglobulin family
    pfam01821
    Location:701 → 737
    ANATO; Anaphylotoxin-like domain
    pfam01835
    Location:127 → 222
    A2M_N; MG2 domain
    pfam07677
    Location:1423 → 1513
    A2M_recep; A-macroglobulin receptor
    pfam07703
    Location:479 → 617
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region
    cl02512
    Location:1524 → 1684
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...
    cl08267
    Location:997 → 1305
    ISOPREN_C2_like; This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.