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uba5 ubiquitin-like modifier activating enzyme 5 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111237868, updated on 15-Mar-2024

Summary

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Gene symbol
uba5
Gene description
ubiquitin-like modifier activating enzyme 5
See related
Ensembl:ENSSDUG00000006405
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See uba5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019175379.1 (577231..580845)

NW_019175379.1Genomic Context describing neighboring genes Neighboring gene U2 snRNP-associated SURP domain containing Neighboring gene acyl-CoA dehydrogenase family, member 11 Neighboring gene atypical chemokine receptor 4b Neighboring gene sickle tail protein homolog Neighboring gene uracil nucleotide/cysteinyl leukotriene receptor-like Neighboring gene nephronophthisis 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019175379 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UFM1 activating enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ufmylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like modifier-activating enzyme 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019175379.1 Reference Sdu_1.0 Primary Assembly

    Range
    577231..580845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022767161.1 → XP_022622882.1  ubiquitin-like modifier-activating enzyme 5

    UniProtKB/TrEMBL
    A0A3B4TSJ6
    Related
    ENSSDUP00000008725.1, ENSSDUT00000008894.1
    Conserved Domains (1) summary
    cd00757
    Location:49 → 294
    ThiF_MoeB_HesA_family; ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD ...
Nucleotide Protein
Heading Accession and Version

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