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LOC111237853 lipin 2 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111237853, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111237853
Gene description
lipin 2
See related
Ensembl:ENSSDUG00000008211
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Also known as
lpin2
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Genomic context

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See LOC111237853 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019175379.1 (1891340..1906331, complement)

NW_019175379.1Genomic Context describing neighboring genes Neighboring gene adenylate cyclase activating polypeptide 1a Neighboring gene methyltransferase 4, N6-adenosine Neighboring gene structural maintenance of chromosomes flexible hinge domain containing 1 Neighboring gene elastin microfibril interfacer 2b Neighboring gene myomesin 1b Neighboring gene myosin, light chain 12, genome duplicate 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019175379 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to insulin stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidate phosphatase LPIN2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019175379.1 Reference Sdu_1.0 Primary Assembly

    Range
    1891340..1906331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022767140.1 → XP_022622861.1  phosphatidate phosphatase LPIN2

    UniProtKB/TrEMBL
    A0A3B4TYF0, A0A3B4TYZ9
    Related
    ENSSDUP00000011326.1, ENSSDUT00000011539.1
    Conserved Domains (3) summary
    pfam04571
    Location:1 → 107
    Lipin_N; lipin, N-terminal conserved region
    pfam08235
    Location:684 → 909
    LNS2; LNS2 (Lipin/Ned1/Smp2)
    pfam16876
    Location:515 → 605
    Lipin_mid; Lipin/Ned1/Smp2 multi-domain protein middle domain

  2. XM_022767139.1 → XP_022622860.1  phosphatidate phosphatase LPIN2

    UniProtKB/TrEMBL
    A0A3B4TYF0, A0A3B4TYZ9
    Related
    ENSSDUP00000011282.1, ENSSDUT00000011495.1
    Conserved Domains (3) summary
    pfam04571
    Location:1 → 107
    Lipin_N; lipin, N-terminal conserved region
    pfam08235
    Location:684 → 909
    LNS2; LNS2 (Lipin/Ned1/Smp2)
    pfam16876
    Location:515 → 605
    Lipin_mid; Lipin/Ned1/Smp2 multi-domain protein middle domain
Nucleotide Protein
Heading Accession and Version

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