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chmp1b chromatin modifying protein 1B [ Seriola dumerili (greater amberjack) ]

Gene ID: 111234346, updated on 15-Mar-2024

Summary

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Gene symbol
chmp1b
Gene description
chromatin modifying protein 1B
See related
Ensembl:ENSSDUG00000014560
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174704.1 (7728955..7732467, complement)

NW_019174704.1Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide gated channel subunit alpha 2b Neighboring gene Ras-related GTP binding A Neighboring gene protein FAM46C-like Neighboring gene bromodomain and WD repeat domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174704 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosome transport via multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in late endosome to vacuole transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
charged multivesicular body protein 1b
Names
charged multivesicular body protein 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174704.1 Reference Sdu_1.0 Primary Assembly

    Range
    7728955..7732467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022762378.1 → XP_022618099.1  charged multivesicular body protein 1b

    UniProtKB/TrEMBL
    A0A3B4UMT6, A0A3B4UMV7
    Related
    ENSSDUP00000020011.1, ENSSDUT00000020364.1
    Conserved Domains (1) summary
    cl21588
    Location:15 → 189
    Snf7
Nucleotide Protein
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