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pax3b paired box 3b [ Seriola dumerili (greater amberjack) ]

Gene ID: 111232791, updated on 15-Mar-2024

Summary

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Gene symbol
pax3b
Gene description
paired box 3b
See related
Ensembl:ENSSDUG00000009804
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Also known as
pax3
Orthologs
human zebrafish all
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Genomic context

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See pax3b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174592.1 (277500..301615)

NW_019174592.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase rnf152-B-like Neighboring gene sphingosine-1-phosphate phosphatase 2 Neighboring gene eph receptor A4, like Neighboring gene uncharacterized LOC111232863

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174592 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired box protein Pax-3
Names
paired box 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174592.1 Reference Sdu_1.0 Primary Assembly

    Range
    277500..301615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022760441.1 → XP_022616162.1  paired box protein Pax-3 isoform X1

    UniProtKB/TrEMBL
    A0A3B4U4H7
    Conserved Domains (3) summary
    pfam12360
    Location:346 → 390
    Pax7; Paired box protein 7
    pfam00046
    Location:223 → 276
    Homeobox; Homeobox domain
    pfam00292
    Location:34 → 159
    PAX; 'Paired box' domain

  2. XM_022760442.1 → XP_022616163.1  paired box protein Pax-3 isoform X2

    UniProtKB/TrEMBL
    A0A3B4U4H7
    Related
    ENSSDUP00000013529.1, ENSSDUT00000013774.1
    Conserved Domains (4) summary
    pfam12360
    Location:348 → 392
    Pax7; Paired box protein 7
    pfam00046
    Location:223 → 276
    Homeobox; Homeobox domain
    pfam00292
    Location:34 → 159
    PAX; 'Paired box' domain
    cl28033
    Location:292 → 468
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
Nucleotide Protein
Heading Accession and Version

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