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ssh1a slingshot protein phosphatase 1a [ Seriola dumerili (greater amberjack) ]

Gene ID: 111231460, updated on 15-Mar-2024

Summary

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Gene symbol
ssh1a
Gene description
slingshot protein phosphatase 1a
See related
Ensembl:ENSSDUG00000011971
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Also known as
ssh1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174272.1 (483057..502597, complement)

NW_019174272.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 119a Neighboring gene coronin-1C Neighboring gene D-amino acid oxidase Neighboring gene SV2 related protein a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174272 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine/serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein phosphatase Slingshot homolog 1
Names
slingshot protein phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174272.1 Reference Sdu_1.0 Primary Assembly

    Range
    483057..502597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022758560.1 → XP_022614281.1  protein phosphatase Slingshot homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B4UCH8
    Related
    ENSSDUP00000016379.1, ENSSDUT00000016683.1
    Conserved Domains (3) summary
    cd11652
    Location:3 → 239
    SSH-N; N-terminal domain conserved in slingshot (SSH) phosphatases
    cd00127
    Location:310 → 446
    DSPc; Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or ...
    pfam08766
    Location:253 → 305
    DEK_C; DEK C terminal domain

  2. XM_022758568.1 → XP_022614289.1  protein phosphatase Slingshot homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B4UCH8
    Conserved Domains (3) summary
    cd11652
    Location:19 → 232
    SSH-N; N-terminal domain conserved in slingshot (SSH) phosphatases
    cd00127
    Location:303 → 439
    DSPc; Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or ...
    pfam08766
    Location:246 → 298
    DEK_C; DEK C terminal domain
Nucleotide Protein
Heading Accession and Version

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