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rrh retinal pigment epithelium-derived rhodopsin homolog [ Seriola dumerili (greater amberjack) ]

Gene ID: 111226031, updated on 15-Mar-2024

Summary

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Gene symbol
rrh
Gene description
retinal pigment epithelium-derived rhodopsin homolog
See related
Ensembl:ENSSDUG00000021290
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174404.1 (21734247..21744917)

NW_019174404.1Genomic Context describing neighboring genes Neighboring gene glucosamine-6-phosphate deaminase 2 Neighboring gene cytochrome c oxidase subunit 8A, mitochondrial Neighboring gene glutamyl aminopeptidase Neighboring gene leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174404 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
visual pigment-like receptor peropsin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174404.1 Reference Sdu_1.0 Primary Assembly

    Range
    21734247..21744917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022751111.1 → XP_022606832.1  visual pigment-like receptor peropsin

    UniProtKB/TrEMBL
    A0A3B4VF47, A0A3B4VFY1
    Related
    ENSSDUP00000029531.1, ENSSDUT00000030030.1
    Conserved Domains (1) summary
    cd15073
    Location:28 → 307
    7tmA_Peropsin; retinal pigment epithelium-derived rhodopsin homolog, member of the class A family of seven-transmembrane G protein-coupled receptors
Nucleotide Protein
Heading Accession and Version

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