U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

phf2 PHD finger protein 2 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111221657, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
phf2
Gene description
PHD finger protein 2
See related
Ensembl:ENSSDUG00000009118
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174343.1 (3217211..3256546)

NW_019174343.1Genomic Context describing neighboring genes Neighboring gene Cas scaffold protein family member 4 Neighboring gene family with sequence similarity 120A Neighboring gene BARX homeobox 1 Neighboring gene protein tyrosine phosphatase domain containing 1a

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_019174343 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
lysine-specific demethylase PHF2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174343.1 Reference Sdu_1.0 Primary Assembly

    Range
    3217211..3256546
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022745135.1 → XP_022600856.1  lysine-specific demethylase PHF2 isoform X1

    UniProtKB/TrEMBL
    A0A3B4U1W9, A0A3B4U2P8
    Related
    ENSSDUP00000012576.1, ENSSDUT00000012799.1
    Conserved Domains (3) summary
    smart00558
    Location:201 → 264
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15641
    Location:7 → 56
    PHD_PHF2; PHD finger found in lysine-specific demethylase PHF2
    cl21464
    Location:236 → 336
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_022745137.1 → XP_022600858.1  lysine-specific demethylase PHF2 isoform X2

    UniProtKB/TrEMBL
    A0A3B4U2P8
    Conserved Domains (3) summary
    smart00558
    Location:201 → 264
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15641
    Location:7 → 56
    PHD_PHF2; PHD finger found in lysine-specific demethylase PHF2
    cl21464
    Location:236 → 336
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.