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tes testis derived transcript (3 LIM domains) [ Seriola dumerili (greater amberjack) ]

Gene ID: 111220535, updated on 15-Mar-2024

Summary

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Gene symbol
tes
Gene description
testis derived transcript (3 LIM domains)
See related
Ensembl:ENSSDUG00000016665
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174325.1 (938044..952175, complement)

NW_019174325.1Genomic Context describing neighboring genes Neighboring gene caveolin 1 Neighboring gene caveolin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174325 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
testin
Names
testin LIM domain protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174325.1 Reference Sdu_1.0 Primary Assembly

    Range
    938044..952175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022743619.1 → XP_022599340.1  testin

    UniProtKB/TrEMBL
    A0A3B4UYJ1
    Related
    ENSSDUP00000022930.1, ENSSDUT00000023347.1
    Conserved Domains (5) summary
    cd09413
    Location:452 → 509
    LIM1_Testin; The first LIM domain of Testin
    cd09416
    Location:515 → 570
    LIM2_Testin; The second LIM domain of Testin
    cd09419
    Location:577 → 635
    LIM3_Testin; The third LIM domain of Testin
    cd09829
    Location:217 → 303
    PET_testin; The PET domain of Testin
    cl26464
    Location:93 → 213
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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