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osbpl6 oxysterol binding protein-like 6 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111218125, updated on 11-Apr-2024

Summary

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Gene symbol
osbpl6
Gene description
oxysterol binding protein-like 6
See related
Ensembl:ENSSDUG00000000600
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174307.1 (12447315..12486029)

NW_019174307.1Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 11a Neighboring gene cytochrome c-like Neighboring gene protein kinase, interferon-inducible double stranded RNA dependent activator Neighboring gene caspase 10, apoptosis-related cysteine peptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174307 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cholesterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oxysterol-binding protein-related protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174307.1 Reference Sdu_1.0 Primary Assembly

    Range
    12447315..12486029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022740248.1 → XP_022595969.1  oxysterol-binding protein-related protein 6

    UniProtKB/TrEMBL
    A0A3B4T3G8, A0A3B4T3Z2
    Related
    ENSSDUP00000000717.1, ENSSDUT00000000762.1
    Conserved Domains (3) summary
    cd13287
    Location:50 → 172
    PH_ORP3_ORP6_ORP7; Human Oxysterol binding protein related proteins 3, 6, and 7 Pleckstrin homology (PH) domain
    pfam01237
    Location:556 → 897
    Oxysterol_BP; Oxysterol-binding protein
    pfam15390
    Location:184 → 268
    DUF4613; Domain of unknown function (DUF4613)
Nucleotide Protein
Heading Accession and Version

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