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BCL11A BCL11 transcription factor A [ Enhydra lutris kenyoni (northern sea otter) ]

Gene ID: 111148006, updated on 15-Mar-2024

Summary

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Gene symbol
BCL11A
Gene description
BCL11 transcription factor A
See related
EnsemblRapid:ENSELKG00000000314
Gene type
protein coding
RefSeq status
MODEL
Organism
Enhydra lutris kenyoni (sub-species: kenyoni)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Enhydra
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM228890v2 (GCF_002288905.1) Unplaced Scaffold NW_019154102.1 (12003246..12104732, complement)

NW_019154102.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCHC-type and RNA-binding motif-containing protein 1-like Neighboring gene ubiquitin-conjugating enzyme E2 L3-like Neighboring gene poly(A) polymerase gamma Neighboring gene REL proto-oncogene, NF-kB subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019154102 Unplaced Scaffold Reference ASM228890v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of dendrite development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B-cell lymphoma/leukemia 11A
Names
B cell CLL/lymphoma 11A
BAF chromatin remodeling complex subunit BCL11A
BCL11A, BAF complex component

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Enhydra lutris kenyoni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228890v2 Primary Assembly

Genomic

  1. NW_019154102.1 Reference ASM228890v2 Primary Assembly

    Range
    12003246..12104732 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022504340.1 → XP_022360048.1  B-cell lymphoma/leukemia 11A isoform X3

    UniProtKB/TrEMBL
    A0A2Y9JG83
    Conserved Domains (3) summary
    sd00017
    Location:379 → 399
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:378 → 399
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:391 → 416
    zf-H2C2_2; Zinc-finger double domain

  2. XM_022504341.1 → XP_022360049.1  B-cell lymphoma/leukemia 11A isoform X4

    UniProtKB/TrEMBL
    A0A2Y9JKB7
    Related
    ENSELKP00000000322.1, ENSELKT00000000389.1

  3. XM_022504339.1 → XP_022360047.1  B-cell lymphoma/leukemia 11A isoform X2

    UniProtKB/TrEMBL
    A0A2Y9JGA3
    Related
    ENSELKP00000000373.1, ENSELKT00000000441.1
    Conserved Domains (3) summary
    sd00017
    Location:710 → 730
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:709 → 730
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:357 → 382
    zf-H2C2_2; Zinc-finger double domain

  4. XM_022504338.1 → XP_022360046.1  B-cell lymphoma/leukemia 11A isoform X1

    UniProtKB/TrEMBL
    A0A2Y9JQG1
    Conserved Domains (3) summary
    sd00017
    Location:744 → 764
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:743 → 764
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:391 → 416
    zf-H2C2_2; Zinc-finger double domain

  5. XM_022504337.1 → XP_022360045.1  B-cell lymphoma/leukemia 11A isoform X1

    UniProtKB/TrEMBL
    A0A2Y9JQG1
    Related
    ENSELKP00000000363.1, ENSELKT00000000431.1
    Conserved Domains (3) summary
    sd00017
    Location:744 → 764
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:743 → 764
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:391 → 416
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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