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SACTE_0551 DNA ligase D, 3'-phosphoesterase domain-containing protein [ Streptomyces sp. SirexAA-E ]

Gene ID: 11102726, updated on 6-Jul-2014
Gene symbol
SACTE_0551
Gene description
DNA ligase D, 3'-phosphoesterase domain-containing protein
Locus tag
SACTE_0551
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Streptomyces sp. SirexAA-E (strain: SirexAA-E)
Lineage
Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces
Sequence:
NC_015953.1 (612726..613286)

NC_015953.1Genomic Context describing neighboring genes Neighboring gene glucan endo-1,3-beta-D-glucosidase Neighboring gene hypothetical protein Neighboring gene MIP family channel protein Neighboring gene peptidase C60 sortase A and B

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Non-homologous end-joining, organism-specific biosystem (from KEGG)
    Non-homologous end-joining, organism-specific biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Non-homologous end-joining, conserved biosystem (from KEGG)
    Non-homologous end-joining, conserved biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
Names
DNA ligase D, 3'-phosphoesterase domain-containing protein
YP_004801031.1
  • TIGRFAM: DNA ligase D, 3'-phosphoesterase domain protein~KEGG: sgr:SGR_6488 hypothetical protein

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_015953.1 

    Range
    612726..613286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_004801031.1 DNA ligase D, 3'-phosphoesterase domain-containing protein [Streptomyces sp. SirexAA-E]

    See proteins identical to YP_004801031.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G2NK67
    Conserved Domains (1) summary
    cl11819
    Location:2147
    Blast Score: 459
    LigD_N; DNA polymerase Ligase (LigD)