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tmod1 tropomodulin 1 [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110961586, updated on 15-Mar-2024

Summary

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Gene symbol
tmod1
Gene description
tropomodulin 1
See related
Ensembl:ENSAPOG00000010063
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 3 NC_067115.1 (17371370..17391515, complement)

Chromosome 3 - NC_067115.1Genomic Context describing neighboring genes Neighboring gene bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase-like Neighboring gene clathrin, light chain A Neighboring gene complexin 2a Neighboring gene tudor domain-containing protein 7A-like Neighboring gene STRA6-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067115.1 Chromosome 3 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tropomyosin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in myofibril assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pointed-end actin filament capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in myofibril IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in striated muscle thin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tropomodulin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067115.1 Reference KAUST_Apoly_ChrSc

    Range
    17371370..17391515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051945283.1 → XP_051801243.1  tropomodulin-1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1G8G3

  2. XM_022209263.2 → XP_022064955.1  tropomodulin-1 isoform X1

    Related
    ENSAPOP00000026323.1
    Conserved Domains (2) summary
    pfam03250
    Location:4 → 143
    Tropomodulin
    cl26161
    Location:213 → 314
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein
Heading Accession and Version

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