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SP9 Sp9 transcription factor [ Neomonachus schauinslandi (Hawaiian monk seal) ]

Gene ID: 110592272, updated on 15-Mar-2024

Summary

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Gene symbol
SP9
Gene description
Sp9 transcription factor
See related
EnsemblRapid:ENSNSCG00000021337
Gene type
protein coding
RefSeq status
MODEL
Organism
Neomonachus schauinslandi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Neomonachus
Orthologs
human mouse all
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Genomic context

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See SP9 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM220157v2 (GCF_002201575.2) 3 NC_058405.1 (135543421..135545962)
100 previous assembly ASM220157v1 (GCF_002201575.1) Unplaced Scaffold NW_018734396.1 (42758403..42760944, complement)

Chromosome 3 - NC_058405.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110592371 Neighboring gene Obg like ATPase 1 Neighboring gene 40S ribosomal protein S18-like Neighboring gene corepressor interacting with RBPJ, CIR1 Neighboring gene 40S ribosomal protein SA-like Neighboring gene secernin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Sp9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neomonachus schauinslandi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM220157v2

Genomic

  1. NC_058405.1 Reference ASM220157v2

    Range
    135543421..135545962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021703220.1 → XP_021558895.1  transcription factor Sp9

    UniProtKB/TrEMBL
    A0A2Y9IBX3
    Related
    ENSNSCP00000026886.1, ENSNSCT00000030302.1
    Conserved Domains (4) summary
    sd00017
    Location:337 → 356
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:392 → 414
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:378 → 401
    zf-H2C2_2; Zinc-finger double domain
    cd22549
    Location:19 → 333
    SP9_N; N-terminal domain of transcription factor Specificity Protein (SP) 9 and similar proteins
Nucleotide Protein
Heading Accession and Version

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