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NFATC1 nuclear factor of activated T cells 1 [ Neomonachus schauinslandi (Hawaiian monk seal) ]

Gene ID: 110576910, updated on 15-Mar-2024

Summary

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Gene symbol
NFATC1
Gene description
nuclear factor of activated T cells 1
See related
EnsemblRapid:ENSNSCG00000001596
Gene type
protein coding
RefSeq status
MODEL
Organism
Neomonachus schauinslandi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Neomonachus
Orthologs
human mouse all
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Genomic context

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See NFATC1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM220157v2 (GCF_002201575.2) 14 NC_058416.1 (593846..697922, complement)
100 previous assembly ASM220157v1 (GCF_002201575.1) Unplaced Scaffold NW_018734302.1 (57227350..57331650)

Chromosome 14 - NC_058416.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110577186 Neighboring gene 28S ribosomal protein S18c, mitochondrial-like Neighboring gene ATPase phospholipid transporting 9B (putative) Neighboring gene 60S ribosomal protein L11-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcineurin-NFAT signaling cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor of activated T-cells, cytoplasmic 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neomonachus schauinslandi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM220157v2

Genomic

  1. NC_058416.1 Reference ASM220157v2

    Range
    593846..697922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044921058.1 → XP_044776993.1  nuclear factor of activated T-cells, cytoplasmic 1 isoform X4

    UniProtKB/TrEMBL
    A0A8M1MW76
    Conserved Domains (3) summary
    cd07881
    Location:414 → 588
    RHD-n_NFAT; N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins
    PHA03247
    Location:7 → 434
    PHA03247; large tegument protein UL36; Provisional
    cl15674
    Location:593 → 693
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

  2. XM_044921056.1 → XP_044776991.1  nuclear factor of activated T-cells, cytoplasmic 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M1MT04
    Conserved Domains (3) summary
    cd07881
    Location:414 → 588
    RHD-n_NFAT; N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins
    PHA03247
    Location:7 → 434
    PHA03247; large tegument protein UL36; Provisional
    cl15674
    Location:593 → 693
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

  3. XM_044921055.1 → XP_044776990.1  nuclear factor of activated T-cells, cytoplasmic 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M1MUU4
    Conserved Domains (3) summary
    cd07881
    Location:401 → 575
    RHD-n_NFAT; N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins
    PHA03247
    Location:680 → 900
    PHA03247; large tegument protein UL36; Provisional
    cl15674
    Location:580 → 680
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

  4. XM_044921057.1 → XP_044776992.1  nuclear factor of activated T-cells, cytoplasmic 1 isoform X3

    UniProtKB/TrEMBL
    A0A8M1MT10
    Conserved Domains (3) summary
    cd07881
    Location:414 → 588
    RHD-n_NFAT; N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins
    PHA03247
    Location:7 → 434
    PHA03247; large tegument protein UL36; Provisional
    cl15674
    Location:593 → 693
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
Nucleotide Protein
Heading Accession and Version

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