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RBPJ recombination signal binding protein for immunoglobulin kappa J region [ Neomonachus schauinslandi (Hawaiian monk seal) ]

Gene ID: 110571350, updated on 15-Mar-2024

Summary

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Gene symbol
RBPJ
Gene description
recombination signal binding protein for immunoglobulin kappa J region
See related
EnsemblRapid:ENSNSCG00000019576
Gene type
protein coding
RefSeq status
MODEL
Organism
Neomonachus schauinslandi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Neomonachus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM220157v2 (GCF_002201575.2) 2 NC_058404.1 (182593812..182702144, complement)
100 previous assembly ASM220157v1 (GCF_002201575.1) Unplaced Scaffold NW_018734273.1 (12342013..12450554)

Chromosome 2 - NC_058404.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial-like Neighboring gene cholecystokinin A receptor Neighboring gene small integral membrane protein 20 Neighboring gene SEL1L family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MAML1-RBP-Jkappa- ICN1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
recombining binding protein suppressor of hairless

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neomonachus schauinslandi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM220157v2

Genomic

  1. NC_058404.1 Reference ASM220157v2

    Range
    182593812..182702144 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021679451.2 → XP_021535126.1  recombining binding protein suppressor of hairless

    UniProtKB/TrEMBL
    A0A2Y9G7V4
    Related
    ENSNSCP00000024969.1
    Conserved Domains (3) summary
    cd01176
    Location:337 → 433
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:193 → 315
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:35 → 160
    LAG1-DNAbind; LAG1, DNA binding
Nucleotide Protein
Heading Accession and Version

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