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Snph syntaphilin [ Meriones unguiculatus (Mongolian gerbil) ]

Gene ID: 110564091, updated on 15-Mar-2024

Summary

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Gene symbol
Snph
Gene description
syntaphilin
See related
EnsemblRapid:ENSMUGG00015012771
Gene type
protein coding
RefSeq status
MODEL
Organism
Meriones unguiculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Gerbillinae; Meriones
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current Bangor_MerUng_6.1 (GCF_030254825.1) 4 NC_083352.1 (127624315..127663956)
100 previous assembly MunDraft-v1.0 (GCF_002204375.1) Unplaced Scaffold NW_018660299.1 (149854..189833)

Chromosome 4 - NC_083352.1Genomic Context describing neighboring genes Neighboring gene chromosome 4 C20orf202 homolog Neighboring gene RAD21 cohesin complex component like 1 Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family member E-like Neighboring gene syndecan binding protein 2 Neighboring gene large ribosomal subunit protein eL37-like Neighboring gene FKBP prolyl isomerase 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaphilin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030254825.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bangor_MerUng_6.1

Genomic

  1. NC_083352.1 Reference Bangor_MerUng_6.1

    Range
    127624315..127663956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021661371.2 → XP_021517046.1  syntaphilin isoform X1

    Related
    ENSMUGP00015017294.1, ENSMUGT00015022989.1
    Conserved Domains (1) summary
    pfam15290
    Location:102 → 318
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  2. XM_060383093.1 → XP_060239076.1  syntaphilin isoform X1

  3. XM_021661372.2 → XP_021517047.1  syntaphilin isoform X2

    Conserved Domains (1) summary
    pfam15290
    Location:69 → 285
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  4. XM_060383097.1 → XP_060239080.1  syntaphilin isoform X4

  5. XM_060383095.1 → XP_060239078.1  syntaphilin isoform X3

    Related
    ENSMUGP00015017305.1, ENSMUGT00015023005.1

  6. XM_060383098.1 → XP_060239081.1  syntaphilin isoform X5

  7. XM_060383099.1 → XP_060239082.1  syntaphilin isoform X6

  8. XM_060383094.1 → XP_060239077.1  syntaphilin isoform X1

  9. XM_060383096.1 → XP_060239079.1  syntaphilin isoform X3

  10. XM_021661377.2 → XP_021517052.1  syntaphilin isoform X3

    Conserved Domains (1) summary
    pfam15290
    Location:58 → 274
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  11. XM_021661375.2 → XP_021517050.1  syntaphilin isoform X5

    Conserved Domains (1) summary
    pfam15290
    Location:25 → 241
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  12. XM_021661376.2 → XP_021517051.1  syntaphilin isoform X6

    Related
    ENSMUGP00015017298.1, ENSMUGT00015022996.1
    Conserved Domains (1) summary
    pfam15290
    Location:20 → 205
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp
Nucleotide Protein Strain
Heading Accession and Version

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