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LOC110526271 T-cell immunomodulatory protein [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110526271, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110526271
Gene description
T-cell immunomodulatory protein
See related
Ensembl:ENSOMYG00000004746
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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Location:
chromosome: 6
Exon count:
18
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 6 NC_048570.1 (60559137..60671662, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 6 NC_035082.1 (56032527..56142570, complement)

Chromosome 6 - NC_048570.1Genomic Context describing neighboring genes Neighboring gene dnaJ homolog subfamily A member 2 Neighboring gene neuropilin and tolloid-like protein 2 Neighboring gene phosphorylase b kinase regulatory subunit beta Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-cell immunomodulatory protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048570.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    60559137..60671662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036980625.1 → XP_036836520.1  T-cell immunomodulatory protein isoform X2

    UniProtKB/TrEMBL
    A0A8C7NLC8
    Conserved Domains (1) summary
    pfam13517
    Location:97 → 158
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

  2. XM_021607083.2 → XP_021462758.2  T-cell immunomodulatory protein isoform X1

    UniProtKB/TrEMBL
    A0A8C7V3W8, A0A8C7V8G6
    Related
    ENSOMYP00000009609.2, ENSOMYT00000010639.2
    Conserved Domains (1) summary
    pfam13517
    Location:45 → 110
    VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
Nucleotide Protein
Heading Accession and Version

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