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LOC110521618 phospholipid phosphatase 6 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110521618, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110521618
Gene description
phospholipid phosphatase 6
See related
Ensembl:ENSOMYG00000036902
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
plpp6
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Genomic context

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See LOC110521618 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
2
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 30 NC_050570.1 (26144149..26149802)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 4 NC_035080.1 (22973317..22978240)

Chromosome 30 - NC_050570.1Genomic Context describing neighboring genes Neighboring gene Jun proto-oncogene, AP-1 transcription factor subunit Neighboring gene peroxiredoxin 6 Neighboring gene si:dkey-239i20.4 Neighboring gene flavin-containing monooxygenase 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipid phosphatase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_050570.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    26144149..26149802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021599299.2 → XP_021454974.1  phospholipid phosphatase 6

    UniProtKB/TrEMBL
    A0A060Y3K0
    Related
    ENSOMYP00000079665.1, ENSOMYT00000086810.2
    Conserved Domains (1) summary
    cd03391
    Location:111 → 269
    PAP2_containing_2_like; PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_2. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to eukaryota, lacks functional characterization and may act as a ...
Nucleotide Protein
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Gene LinkOut

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