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cep162 centrosomal protein 162 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110511978, updated on 15-Mar-2024

Summary

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Gene symbol
cep162
Gene description
centrosomal protein 162
See related
Ensembl:ENSOMYG00000038682
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See cep162 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
29
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 3 NC_048567.1 (16805002..16826110, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 3 NC_035079.1 (21336152..21357796)

Chromosome 3 - NC_048567.1Genomic Context describing neighboring genes Neighboring gene cytochrome b5 reductase 4 Neighboring gene melanocortin 2 receptor accessory protein 2 Neighboring gene adhesion G protein-coupled receptor B1 Neighboring gene uncharacterized LOC118946294 Neighboring gene t-SNARE domain-containing protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axonemal microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
centrosomal protein of 162 kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048567.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    16805002..16826110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036970566.1 → XP_036826461.1  centrosomal protein of 162 kDa isoform X3

    Conserved Domains (3) summary
    PHA03307
    Location:298 → 624
    PHA03307; transcriptional regulator ICP4; Provisional
    COG1196
    Location:730 → 1225
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01690
    Location:515 → 750
    PLRV_ORF5; Potato leaf roll virus readthrough protein

  2. XM_036970565.1 → XP_036826460.1  centrosomal protein of 162 kDa isoform X2

    Conserved Domains (3) summary
    PHA03307
    Location:334 → 660
    PHA03307; transcriptional regulator ICP4; Provisional
    COG1196
    Location:766 → 1261
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01690
    Location:551 → 786
    PLRV_ORF5; Potato leaf roll virus readthrough protein

  3. XM_036970564.1 → XP_036826459.1  centrosomal protein of 162 kDa isoform X1

    Conserved Domains (3) summary
    PHA03307
    Location:335 → 661
    PHA03307; transcriptional regulator ICP4; Provisional
    COG1196
    Location:767 → 1262
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01690
    Location:552 → 787
    PLRV_ORF5; Potato leaf roll virus readthrough protein

  4. XM_036970567.1 → XP_036826462.1  centrosomal protein of 162 kDa isoform X4

    UniProtKB/TrEMBL
    A0A8C7TIC4
    Related
    ENSOMYP00000083863.2, ENSOMYT00000091342.2
    Conserved Domains (3) summary
    PHA03307
    Location:197 → 523
    PHA03307; transcriptional regulator ICP4; Provisional
    COG1196
    Location:629 → 1124
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01690
    Location:414 → 649
    PLRV_ORF5; Potato leaf roll virus readthrough protein
Nucleotide Protein
Heading Accession and Version

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