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LOC110507545 limbic system associated membrane protein [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110507545, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110507545
Gene description
limbic system associated membrane protein
See related
Ensembl:ENSOMYG00000046155
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
lsamp
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Genomic context

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Location:
chromosome: 27
Exon count:
11
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 27 NC_048591.1 (10971980..12125733)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 27 NC_035103.1 (10766433..11932423)

Chromosome 27 - NC_048591.1Genomic Context describing neighboring genes Neighboring gene immunoglobulin superfamily member 11 Neighboring gene uncharacterized LOC118944743 Neighboring gene neuromodulin Neighboring gene myelin protein zero-like protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
limbic system-associated membrane protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048591.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    10971980..12125733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021587598.2 → XP_021443273.1  limbic system-associated membrane protein isoform X4

    UniProtKB/TrEMBL
    A0A060W7N7
    Conserved Domains (3) summary
    pfam07679
    Location:220 → 300
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:130 → 196
    Ig_3; Immunoglobulin domain
    cl11960
    Location:33 → 124
    Ig; Immunoglobulin domain

  2. XM_021587594.2 → XP_021443269.1  limbic system-associated membrane protein isoform X3

    UniProtKB/TrEMBL
    A0A060W7N7
    Conserved Domains (3) summary
    pfam07679
    Location:220 → 300
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:130 → 196
    Ig_3; Immunoglobulin domain
    cl11960
    Location:33 → 124
    Ig; Immunoglobulin domain

  3. XM_021587597.2 → XP_021443272.1  limbic system-associated membrane protein isoform X5

    UniProtKB/TrEMBL
    A0A060W7N7
    Conserved Domains (3) summary
    pfam07679
    Location:220 → 300
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:130 → 196
    Ig_3; Immunoglobulin domain
    cl11960
    Location:33 → 124
    Ig; Immunoglobulin domain

  4. XM_021587595.2 → XP_021443270.1  limbic system-associated membrane protein isoform X2

    UniProtKB/TrEMBL
    A0A060W7N7
    Conserved Domains (3) summary
    pfam07679
    Location:220 → 300
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:130 → 196
    Ig_3; Immunoglobulin domain
    cl11960
    Location:33 → 124
    Ig; Immunoglobulin domain

  5. XM_021587593.2 → XP_021443268.1  limbic system-associated membrane protein isoform X1

    UniProtKB/TrEMBL
    A0A8C7V3X6, A0A8C7WKM8
    Related
    ENSOMYP00000102372.1, ENSOMYT00000111036.2
    Conserved Domains (3) summary
    smart00408
    Location:145 → 200
    IGc2; Immunoglobulin C-2 Type
    pfam07679
    Location:224 → 304
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:37 → 128
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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