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LOC110503247 immunoglobulin superfamily member 10 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110503247, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110503247
Gene description
immunoglobulin superfamily member 10
See related
Ensembl:ENSOMYG00000018204
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
igsf10
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Genomic context

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Location:
chromosome: 24
Exon count:
10
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 24 NC_048588.1 (36041556..36065654)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 24 NC_035100.1 (36439408..36467252, complement)

Chromosome 24 - NC_048588.1Genomic Context describing neighboring genes Neighboring gene muscleblind-like protein 1 Neighboring gene histidine-rich glycoprotein-like Neighboring gene arylacetamide deacetylase-like Neighboring gene P2Y purinoceptor 12 Neighboring gene P2Y purinoceptor 13-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
immunoglobulin superfamily member 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048588.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    36041556..36065654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036961712.1 → XP_036817607.1  immunoglobulin superfamily member 10

    UniProtKB/TrEMBL
    A0A8C7QLB6
    Related
    ENSOMYP00000039225.2, ENSOMYT00000042818.2
    Conserved Domains (7) summary
    smart00082
    Location:236 → 297
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:56 → 75
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:99 → 158
    LRR_8; Leucine rich repeat
    pfam13927
    Location:2572 → 2654
    Ig_3; Immunoglobulin domain
    cd00096
    Location:2572 → 2576
    Ig; Ig strand A [structural motif]
    cd21340
    Location:92 → 237
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl11960
    Location:1802 → 1878
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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