U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ighmbp2 immunoglobulin mu DNA binding protein 2 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110501334, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ighmbp2
Gene description
immunoglobulin mu DNA binding protein 2
See related
Ensembl:ENSOMYG00000028240
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
19
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 2 NC_048566.1 (103283193..103317354, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 2 NC_035078.1 (84432194..84467908)

Chromosome 2 - NC_048566.1Genomic Context describing neighboring genes Neighboring gene kelch repeat and BTB (POZ) domain containing 4 Neighboring gene receptor-associated protein of the synapse, 43kD Neighboring gene chitinase domain containing 1 Neighboring gene uncharacterized LOC110533945 Neighboring gene glutamine amidotransferase class 1 domain containing 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA-binding protein SMUBP-2
Names
immunoglobulin mu binding protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048566.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    103283193..103317354 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021578827.2 → XP_021434502.2  DNA-binding protein SMUBP-2

    UniProtKB/TrEMBL
    A0A8C7W2F3, A0A8K9V819
    Related
    ENSOMYP00000064166.2, ENSOMYT00000069846.2
    Conserved Domains (3) summary
    cd02641
    Location:730 → 789
    R3H_Smubp-2_like; R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most ...
    TIGR00376
    Location:25 → 639
    TIGR00376; DNA helicase, putative
    pfam01428
    Location:909 → 945
    zf-AN1; AN1-like Zinc finger
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.