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mis18bp1 MIS18 binding protein 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110498194, updated on 15-Mar-2024

Summary

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Gene symbol
mis18bp1
Gene description
MIS18 binding protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
18
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 19 NC_048583.1 (58606608..58625926)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 19 NC_035095.1 (54149136..54168472)

Chromosome 19 - NC_048583.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat protein 1 Neighboring gene MAM domain-containing glycosylphosphatidylinositol anchor protein 2 Neighboring gene uncharacterized im:7136021 Neighboring gene ena/VASP-like protein Neighboring gene YY1 transcription factor a Neighboring gene delta(4)-desaturase, sphingolipid 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
mis18-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048583.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    58606608..58625926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021574815.2 → XP_021430490.2  mis18-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A060XPM6
    Conserved Domains (3) summary
    PTZ00449
    Location:581 → 862
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    cd00167
    Location:927 → 970
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam09133
    Location:384 → 467
    SANTA; SANTA (SANT Associated)

  2. XM_036955190.1 → XP_036811085.1  mis18-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A060XPM6
    Conserved Domains (3) summary
    PTZ00449
    Location:581 → 862
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    cd00167
    Location:927 → 970
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam09133
    Location:384 → 467
    SANTA; SANTA (SANT Associated)

  3. XM_036955191.1 → XP_036811086.1  mis18-binding protein 1 isoform X2

    Conserved Domains (3) summary
    PTZ00449
    Location:173 → 454
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    cd00167
    Location:519 → 562
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam09133
    Location:1 → 59
    SANTA; SANTA (SANT Associated)
Nucleotide Protein
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